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Warwicker Group
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Resources - Web Tools
Functional/Active Sites prediction tool (Tracey Bray) SitesIdentify Primary Reference: Bray T et al (in preparation) Other References: Bate P and Warwicker J (2004) J Mol Biol 340:263-276. Greaves R and Warwicker J (2005) J Mol Biol 349:547-557. Interface and Mutant Packing tool (Salim Bougouffa) tba Primary Reference: Bougouffa S and Warwicker J (in preparation) Other Reference Bougouffa S and Warwicker J (2008) BMC Bioinformatics 9:448. Protein Surface Display of Conservation (Pedro Chan) p-explore Reference: Chan P and Warwicker J (in preparation) Resources - Collaboration
Webs
UK-India Collaboration: Bioinformatics approaches to study protein assemblies and networks News and Updates Resources - Downloads
pKa calculations with the FD/DH method: README text: text file download Code tar file: tar file download Publication References: Warwicker J (2004) Protein Science 13:2793; Warwicker J (2011) submitted to Proteins; Supplementary data file: data file download Phosphorylation site patch analysis: README text: text file download Code tar file: tar file download Publication Reference: Kitchen J et al (2008) BMC Structural Biology 8:19 Protein interaction site analysis: README text: text file download Code tar file: tar file download Publication Reference: Bougouffa S and Warwicker J (2008) BMC Bioinformatics 9:448 Proteome pK analysis: README text: text file download Code tar file: tar file download Manuscript Reference: Chan P and Warwicker J (2009) BMC Biology 7:69 Potassium Channel models: README text: text file download rat Kv1.4: model download TASK-1: model download STUDENT PRAC 16 NOV FILES: 1AG2 PrP structure: structure download mouse Dpl sequence: sequence download mouse Dpl Modeller model: model download 1I17 Dpl structure: structure download Other resources to be set-up soon (contact Jim Warwicker if interested) Greaves and Warwicker (2005) J Mol Biol: Datasets and Supplementary Data Greaves and Warwicker (2007) BMC Structural Biology: Supplementary Data Cupins web-pages |