M. Rusilowicz Scientific Software Index

A collection of software and utilities developed by M. Rusilowicz.

Bioinformatic Software

Groot
N-rooted fusion graph phylogenies from genomic data incorporating gene fusion events
Coinfinder
GWAS-like tool (in development)
Bio42
Store and analyse genomic data as a graph database
MetaboClust
Time series cluster analysis of -omics data. Visual, interactive, with QCless batch correction
EvovƎ
Generate strong typed genetic programming (STGP) algorithms from C# source code using reflection.
More!
A collection of unpublished software, smaller utilities, and scripts.

Guides

These are general guides. For details on specific software please go to that software's main page.

Installing Python
How to install a Python application.

Publications

Chemometrics Applied to NMR Analysis
Hosted externally
Rusilowicz, M. , O'Keefe, S. , Wilson, J. and Charlton, A. (2014). Chemometrics Applied to NMR Analysis. In Encyclopedia of Analytical Chemistry, R. A. Meyers (Ed.). doi:10.1002/9780470027318.a9300
A batch correction method for liquid chromatography–mass spectrometry data that does not depend on quality control samples
Hosted externally
Rusilowicz, M., Dickinson, M., Charlton, A., O’Keefe, S., & Wilson, J. (2016). A batch correction method for liquid chromatography–mass spectrometry data that does not depend on quality control samples. Metabolomics, 12(3), 56. http://doi.org/10.1007/s11306-016-0972-2
Computational Tools for the Processing and Analysis of Time-course Metabolomic Data
Hosted externally
Rusilowicz, Martin James (2016) Computational Tools for the Processing and Analysis of Time-course Metabolomic Data. EngD thesis, University of York.